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By Jean-Claude Bradley | March 21st 2007 04:23 PM | 5 comments | Print | E-mail | Track Comments
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About Jean-Claude Bradley

Jean-Claude Bradley is an Associate Professor of Chemistry and the E-Learning Coordinator for the College of Arts and Sciences at Drexel University in Philadelphia, PA.

He teaches organic


... Full Bio

I realize that the audience for this blog tends to be more broad based than on UsefulChem but once in a while I'll throw in an organic chemistry puzzle to see if there are any organic chemists out there lurking.

Ever since we isolated our Ugi products, we've been trying to cyclize them to the diketopiperazines. As described by Hulme, we are trying to effect an intramolecular transamidation catalyzed by trifluoroacetic acid (TFA). Instead of dichloroethane we are generally using CDCl3 so that we can monitor the reaction by NMR.

The first step of removing the boc group seems to proceed very smoothly, with the appearance of t-butyl trifluoroacetate at 1.61 ppm within a few minutes or hours, depending on the concentration of TFA. Here is a H NMR from Khalid's EXP070, 13 min after addition of 50% TFA in CDCl3 showing complete deprotection:

After 2 days at room temperature, a clean conversion to another set of peaks is completed. Whatever is going on, this is not to the desired diketopiperazine. For one thing the furan methyl group is gone.

There also appears to be one missing methylene and the furan protons have disappeared as well. A pair of mysterious doublets appear at 8.4 and 5.6 ppm.

Alicia observes a very similar course for her reaction (EXP065). Upon washing with water, nothing remains in the organic phase. This suggests that all the components are trifluoroacetate salts, most likely still in one piece.

Does anybody have any idea what is going on?

Comments

jcbradley's picture
No I don't - that's the point of the post :)

The biggest mystery I think is what happened to the aromatics?  Everything else aside, those are the most stable peaks.  Where could they have gone?  I am just as stumped as you....Maybe you have a hole in your NMR tube:)

Are the aromatics still, there in the NMR and you just haven't shown them?

I bet that's it.

jcbradley's picture
Albert - all the peaks are shown in the last 2 spectra but the scale is hard to see without expanding.

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