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Capitalists, Genetic Tests and Your DNA

Genetics

Everyone knows there is a lot of crazy stuff on the internet, but did you know there is a lot of great writing about genes, genetics, and human diseases? And believe it or not, sometimes these pieces are written by people who know what they're talking about. If you're looking for what's new in human genetics, you've come to the right place.

Welcome to the 31st Gene Genie, a blog carnival dedicated to great blogging about human genes and how they impact our health. This Mother's Day edition includes an in-depth highlight of the growing industry of personalized genetics.

Popular recent articles

What The Platypus Genome Is and Isn't

Genetics

I haven't contributed a single thing to the platypus genome project, but since my desk sits one floor above where people and robots broke the platypus DNA into chunks, cloned those chunks into bacteria, sequenced the pieces of DNA, and used massive amounts of computing power to assemble the stretches of sequence into a complete genomic whole, I'm going to consider myself somewhat of an authority on the subject and tell you what's wrong with other people's ideas about the platypus.

The genome sequence of the platypus was published Thursday in Nature, and from the press headlines, you could be excused for thinking that genomics has in fact confirmed that the platypus is a freak of nature: part bird, part reptile, and part mammal. The animal certainly looks like it - the platypus has the webbed feet and bill of a duck, and venomous spines and rubbery eggs that remind us of reptiles, but it has fur and feeds its young with milk, so it must be a mammal. The confusing press headlines might even lead you to believe that we sequenced the platypus genome just to figure out what this thing is, when the truth is, as we'll see below, that the genome sequence has essentially confirmed what evolutionary biologists have already deduced about the position of the platypus on the tree of life.

Is the platypus part bird, part reptile part mammal, an amalgam of very different groups of animals? Is it a primitive mammal that resembles the early ancestors of all mammals? Can we figure out just what this creature is by gazing at its genome?


Photo Credit: Stefan Kraft, courtesy of the Wikipedia Commons

Personalized genetic testing: starting down the rabbit hole

Genetics

President Bush has a bill on his desk, the Genetic Information Nondiscrimination Act (GINA), which will prohibit discrimination on the basis of genetic information with respect to health insurance and employment. He is expected to sign the bill, but is science – and the people – ready?

GLUT2 Gene Linked to Sugary Food Consumption

Genetics

A new study released today in the online edition of Physiological Genomics finds that individuals with a specific genetic variation consistently consume more sugary foods.

Recent articles

10 New Genes Related To Body Size Identified

Genetics

An international study has discovered 10 new genes related to human growth.

This meta-analysis, published in the latest issue of Nature Genetics, is based on data from more than 26,000 study participants. It verifies two already known genes, but also discovered ten new genes. Altogether they explain a difference in body size of about 3.5 centimeters.

The analysis produced some biologically insightful findings. Several of the identified genes are targeted by the microRNA let-7, which affects the regulation of other genes. This connection was completely unknown until now. Several other SNPs may affect the structure of chromatin, the chromosome-surrounding proteins. Moreover, the results could have relevance for patients with inherited growth problems, or with problems in bone development, because some of the newly discovered genes have rare mutations, known to be associated with anomalous skeletal growth. Further functional studies are necessary to completely elucidate the biological mechanisms behind this growing list of genes related to height.

'Patchwork' DNA - Genome Of Platypus Decoded

Genetics

The first genome sequencing project of a mammal that lays eggs is complete and, like the animal itself, the DNA of the platypus is something of a patchwork.

The platypus, found in eastern Australia, including Tasmania, is one of the five species of mammals that lay eggs instead of giving birth to live young. The four species of echidna are the other mamimals that share this distinction.

The curious discovery of the duck-billed, egg-laying, otter-footed, beaver-tailed, venomous platypus in 1798, comfortable on land and in water, convinced British scientists that it must be a hoax. Sketches of its appearance were thought to be impossible.

But new research proves that the oddness of the platypus' looks isn't just skin-deep. Platypus DNA is an equally cobbled-together array of avian, reptilian and mammalian lineages that may hold clues for human disease prevention.

Still No Genetic Link To Longevity

Genetics

Want to live a long life? Your genes still don't make a difference (yet) according to research on the bone health of one of the oldest persons in the world who recently died at the age of 114 The study reveals that there were no genetic modifications which could have contributed to this longevity.

The research team, directed by Universitat Autònoma de Barcelona professor Adolfo Díez Pérez, pointed out a healthy lifestyle, a Mediterranean diet, a temperate climate and regular physical activity as the reasons for his excellent health.

They studied the bone mass and analysed the genetics of a man with enviable health who at the time of the study was 113 years old. The research was carried out with four other members of his family: a 101-year-old brother, two daughters aged 81 and 77, and a nephew aged 85, all of them born and still living in a small town of the island of Menorca. The man's bones were in excellent conditions: his bone mass was normal, there were no anomalous curvatures and he had never sustained a fracture.

Discovery - Gene Sequence That Can Make Half Of Us Fatter

Genetics

A study of 90,000 people has uncovered new genetic variants that influence fat mass, weight and risk of obesity. The variants act in addition to the recently described variants of the FTO gene: adults carrying variants in both genes are, on average, 3.8 kg (or 8.5 lb) heavier. The research could lead to better ways of treating obesity.

The variants map close to a gene called MC4R: mutations in this gene are the most common genetic cause of severe familial obesity. The study also highlights the power of large collections of volunteer samples to uncover common variants that influence health.

The study also shows that the gene sequence is significantly more common in those with Indian Asian than European ancestry.

A gene controlling brain size and schizophrenia?

Genetics

When it comes to manipulating your body with drugs, you have no better friend than your G-protein coupled receptors. G-protein coupled receptors (ok, you can call them GPCRs) are proteins embedded within the membrane that makes up the outer border of our cells, and their exposed cell-surface position makes them great targets for drugs. If you've ever taken Claritin, Zantac, beta blockers like Lopressor, oxytocin, epinephrine, Zyprexa, antihistamines, some anti-HIV drugs, opioids, cannabis, or merely consumed a caffeinated beverage, then you've medicinally manipulated some of your GCPRs. Nearly 1,000 of our 24,000 genes encode GCPRs, which testifies to the major role this class of proteins plays in our physiology.

Given the importance of these receptors, it is not surprising that an interesting new study is describing a GPCR which may play a role in brain size, memory, and social interaction, and mutations in this GPCR could play an important role in schizophrenia.

Whose genome?

Genetics

The term "genome" is oft-heard but seldom defined, and indeed has more than one meaning. Little wonder, then, that discussions about genome sequences and comparisons thereof can leave otherwise interested audiences more frustrated than enlightened. "What is a genome?" and "whose genome was sequenced?" are legitimate questions, and what follows is an attempt at clarification that is, by necessity, as much philosophical as scientific.

Definition #1: In a broad sense, a genome can be considered as the collective set of genes, non-coding DNA sequences, and all their variants that are located within the chromosomes of members of a given species. This definition does not consider variation among individuals within a species, and instead relates to distinctions between species.

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