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'Patchwork' DNA - Genome Of Platypus Decoded

Genetics

The first genome sequencing project of a mammal that lays eggs is complete and, like the animal itself, the DNA of the platypus is something of a patchwork.

The platypus, found in eastern Australia, including Tasmania, is one of the five species of mammals that lay eggs instead of giving birth to live young. The four species of echidna are the other mamimals that share this distinction.

The curious discovery of the duck-billed, egg-laying, otter-footed, beaver-tailed, venomous platypus in 1798, comfortable on land and in water, convinced British scientists that it must be a hoax. Sketches of its appearance were thought to be impossible.

But new research proves that the oddness of the platypus' looks isn't just skin-deep. Platypus DNA is an equally cobbled-together array of avian, reptilian and mammalian lineages that may hold clues for human disease prevention.

College Student's Lab-On-a-Chip Device Mimics Golgi Apparatus, Builds Sugar Molecules

Microbiology

Rensselaer Polytechnic Institute graduating senior Jeffery Martin has put his basic knowledge of sugars to exceptional use by creating a lab-on-a-chip device that builds complex, highly specialized sugar molecules, mimicking one of the most important cellular structures in the human body - the Golgi Apparatus.

Among the most important and complex molecules in the human body, sugars control not just metabolism but also how cells communicate with one another.

Cells build sugars in a cellular organelle known as the Golgi Apparatus. Under a microscope, the Golgi looks similar to a stack of pancakes. The strange-looking organelle finishes the process of protein synthesis by decorating the proteins with highly specialized arrangements of sugars. The final sugar-coated molecule is then sent out into the cell to aid in cell communication and to help determine the cell’s function in the body.

Hermaphrodite Worms Triple Sperm When Competition Is Present

Zoology

Scientists used to think that hermaphrodites, due to their low position in the evolutionary scale, did not have sufficiently developed sensory systems to assess the “quality” of their mates.

A new work has shown, however, that earthworms are able to detect the competition by fertilising the eggs that is going to find its sperm, tripling its volume when there is rivalry. This ability is even more refined as they are able to transfer more sperm to more fertile partners.

Hermaphrodites, organisms that have both female and male reproductive organs, such as earthworms, are denied the right to choose their partner. However, a study by researchers at the University of Vigo has shown that worms are capable of telling whether another worm is a virgin or not, and triple the volume of sperm transferred during copulation if they detect a fertilisation competition risk.

The Nucleosome Roadblock On The Path To Understanding Gene Expression

Microbiology

A team of scientists has provided, for the first time, a detailed map of how the building blocks of chromosomes, the cellular structures that contain genes, are organized in the fruit fly Drosophila melanogaster. The work identifies a critical stop sign for transcription, the first step in gene expression, and has implications for understanding how the AIDS virus regulates its genes.

The scientists found that nucleosomes--chromosomal building blocks made up of proteins around which DNA is coiled--occur at precise locations along genes that are actively undergoing transcription. They also showed that RNA polymerase--the enzyme that reads genes as the first step in making proteins--is stopped at the first nucleosome, where it remains idle until it is directed to continue moving forward.

Recent articles

White Nosed Syndrome - Why Are Bats Dying?

Zoology

Investigations continue into the cause of a mysterious illness that has resulted in the deaths of thousands of bats since March 2008. At more than 25 caves and mines in the northeastern U.S, bats exhibiting a condition now referred to as “white-nosed syndrome” have been dying.

The U.S. Geological Survey (USGS) recently issued a Wildlife Health Bulletin, advising wildlife and conservation officials throughout the U.S. to be on the lookout for the condition known as “white-nose syndrome” and to report suspected cases of the disease.

USGS wildlife disease specialist Dr. Kimberli Miller advises that "anyone finding sick or dead bats should avoid handling them and should contact their state wildlife conservation agency or the nearest U.S. Fish & Wildlife Service field office to report their observation.”

Researchers Say RBM3 Is A New Cancer Gene

Molecular Biology

Researchers at the OU Cancer Institute have identified a new gene that causes cancer, according to an article in Oncogene.

The gene and its protein, both called RBM3, are vital for cell division in normal cells. In cancers, low oxygen levels in the tumors cause the amount of this protein to go up dramatically. This causes cancer cells to divide uncontrollably, leading to increased tumor formation.

Researchers used new powerful technology to genetically “silence” the protein and reduce the level of RBM3 in cancerous cells. The approach stopped cancer from growing and led to cell death. The new technique has been tested successfully on several types of cancers – breast, pancreas, colon, lung, ovarian and prostate.

'Dancing' Hair Cells Make Hearing Happen

Biology

St. Jude Children's Research Hospital investigators have found that an electrically powered amplification mechanism in the cochlea of the ear is critical to the acute hearing of humans and other mammals. The findings will enable better understanding of how hearing loss can result from malfunction of this amplification machinery due to genetic mutation or overdose of drugs such as aspirin.

Sound entering the cochlea is detected by the vibration of tiny, hair-like cilia that extend from cochlear hair cells. While the cochlea’s “inner hair cells” are only passive detectors, the so-called “outer hair cells” amplify the sound signal as it transforms into an electrical signal that travels to the brain’s auditory center. Without such amplification, hearing would be far less sensitive, since sound waves entering the cochlea are severely diminished as they pass through the inner ear fluid.

Moonlight Malagasy Mating May Mean Hitting The Right Notes

Zoology

Think it's tough for humans to find the right mate? Malagasy mouse lemurs are so similar that picking a mate of the right species, especially at night time in a tropical forest, was thought to be more luck than science, but new research has shown that our desperately cute distant cousins use vocalizations to pick up a partner of the right species.

Until recently, grey, golden brown, and Goodman’s mouse lemurs were all thought to be the same species. But genetic testing revealed that they are, in fact, three distinct, species so similar that they cannot be told apart by their appearance—so called cryptic species.

“A fundamental problem for cryptic species that live in the same area and habitat is the coordination of reproduction and discrimination between potential mates of the same species and remarkably similar individuals of other species” say Pia Braune and colleagues from the Institute of Zoology, University of Veterinary Medicine, Hannover University.

Genetic Variation In Mitochondria Linked To Macular Degeneration

Molecular Biology

Genetic variation in the DNA of mitochondria – the 'power plants' of cells – contributes to a person’s risk of developing age-related macular degeneration (AMD), say investigators in the first study to examine the mitochondrial genome for changes associated with AMD, the leading cause of blindness in Caucasians over age 50.

“Most people don’t realize that we have two genomes,” said lead author Jeff Canter, M.D., M.P.H., an investigator in the Center for Human Genetics Research. “We have the nuclear genome – the “human genome” – that makes the cover of all the magazines, and then we also have this tiny genome in mitochondria in every cell.”

Canter teamed with Jonathan Haines, Ph.D., and Paul Sternberg, M.D., experts in AMD genetics and treatment, to examine whether a particular variation in the mitochondrial genome is associated with the disease. The genetic change occurs in about 10 percent of Caucasians, referred to as mitochondrial haplogroup T.

Gene Therapy Safety Examined Using Adult Stem Cells

Developmental

A new study by UC Davis researchers provides evidence that methods using human bone marrow-derived stem cells to deliver gene therapy to cure diseases of the blood, bone marrow and certain types of cancer do not cause the development of tumors or leukemia. The study was published online in the May 6, 2008 issue of Molecular Therapy.

"The results of our decade-long study of adult human stem cell transplantation shows that there is little risk of adverse events caused by gene transfer, and that adult human stem cells do not pose a cancer risk when implanted into different organs," said Jan Nolta, senior author of the study and director of the UC Davis Stem Cell Program.

Nolta and her colleagues tested the safety of gene transfer into bone marrow stem cells from human donors in more than 600 mice. None of the transplanted mice developed leukemia or solid tumors caused by the gene therapy treatment, during the evaluation period of up to 18 months.

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